Top lists the currently running processes, together with their process IDs. Ln -s foo establishes a link called a symbolic link or symlink from foo to bar Mv foo bar moves all of foo into bar if bar is a directory or into a file called bar if notĬp foo bar moves all of foo into bar if bar is a directory or into a file called bar if not Particularly useful commands include: ls foo displays a list of files in the directory fooĬd foo moves the current working directory to the directory foo It may also help to familiarize yourself with the basics of command line interfaces. using Sublime for Mac, so my perspective is a bit skewed towards what Im used to.

Windows users attempting to run Rosetta remotely on a Mac or Unix machine will require a tool like PuTTY to provide the necessary interface. Published Sep 28, 2016Last updated Jan 18, 2017. Unix and Apple users have suitable terminals installed by default. Rosetta does include a PyMOLObserver for directly viewing its output in PyMOL instructions for setting up PyMOLObserver are found here. Rosetta does not include a way to actually visualize the output files it creates a tool such as PyMOL or Chimera is necessary to examine the output PDBs. Note that word processors like Microsoft Word and Libre/Open Office are unsatisfactory, as the additional formating they introduce will confuse Rosetta.

For GUI-based tools, Sublime Text and TextMate, are very good on mac and Gedit is included with Ubuntu Linux. A text editor capable of outputting plain text files For cmd-line tools, most people use Emacs, Vim, Nano, or similar.To productively use Rosetta, a number of additional programs are need:

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